Fuji Gen Gakki is not Matsumoto. There's no connection there. Fender Japan (which is a joint venture of FMIC, and Japanese distributors Yamano and Kanda Shokai) did contract with Fuji Gen for years and AFAIK still does, despite what's floating around the internet.
A couple of years ago Hoshino (Ibanez) moved production of its upper line from Fuji Gen to a Korean plant, and a big rumor spread around several forums that "Fender Japan is closing". From remarks made at the FDP by FMIC officers to debunk the rumors, it was pretty clear that Fuji Gen was still their major Japanese producer. Maybe not their only one,though.